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Overview

DOI

lncdtools is a suit of shell scripting, GNU Make, and general neuroimaging 1 companion tools developed in the Laboratory of NeuroCognitive Development.

Also see LNCDR for GNU R functions.

Highlights

  • setup - guide for "installing": clone and add to path
  • tat2 - documentation for calculate time average T2* on 4D EPI
  • BIDS - converting DICOM folders to a BIDS spec file hierarchy using dcmdirtab, dcmtab_bids, and mknii
  • shell scripting tools - docs for shell scripting with iffmain, waitforjobs, dryrun, drytee
  • niinote - warp a nifti creating command to append AFNI's note header (ad hoc provenance)
  • mkls, mkifdiff, mkstat, mkmissing - tools for using make with sentinel files
  • 3dDeconLogGLTs 3dmaskave_grp 3dMinStdClust 3dNotes_each 3dSeedCorr 4dConcatDataTable 4dConcatSubBriks - afni extensions

  1. mostly via AFNI ↩