Overview

lncdtools is a suit of shell scripting, GNU Make, and general neuroimaging ¹ companion tools developed in the Laboratory of NeuroCognitive Development.

Also see LNCDR for GNU R functions.

Highlights

setup - guide for "installing": clone and add to path
BIDS - converting DICOM folders to a BIDS spec file hierarchy using dcmdirtab, dcmtab_bids, and mknii
shell scripting tools - docs for shell scripting with iffmain, waitforjobs, skip-exist, dryrun, drytee
niinote - warp a nifti creating command to append AFNI's note header (ad hoc provenance)
mkls, mkifdiff, mkstat, mkmissing - tools for using make with sentinel files
3dDeconLogGLTs 3dmaskave_grp 3dMinStdClust 3dNotes_each 3dSeedCorr 4dConcatDataTable 4dConcatSubBriks - afni extensions
tat2 (cf. dR2*) - documentation for calculate time average T2* on 4D EPI